Free Text Search

Click to search specific terms in the database (Currently Families, Protein Sequences and Articles)

Search specific terms in the database (Currently Families, Protein Sequences and Articles)
Example: 'Huntingtin'

Free text search
The text search page doesn't support phrase searches and Boolean syntax

Search for Families Articles Protein Sequences

Pattern Matching with Amyloid Sequences

Click to search if a specific pattern matches with amyloids proteins in AmypDB

Search if a specific pattern matches with amyloids proteins stored in AmypDB
Example: 'L-[DEGHKNPQRSTY]-x-L-[DEHKNQR]-C-[DEGHKNPQRSTY]-x(2)-[DEHKNPQY]'

Pattern in PROSITE format

(This search may take a while, please be patient)

Sequence Matching with Amyloid Patterns

Click to search if a sequence matches with amyloids patterns in AmypDB

Search if a sequence (FASTA format) matches with amyloids patterns stored in AmypDB
Example: Click to put a sequence in the textarea

Sequence in FASTA format

Advanced Pattern Search

Click to search patterns by families and calculated parameters (Sensitivity, Specificity, Selectivity and Correlation)

Search Patterns stored in AmypDB for multiple families and with all calculated parameters (Sensitivity, Specificity, Selectivity and Correlation)
Example: Huntingtin Family (Sensitivity>=0.5, Specificity >=0.99) and Prolactin Family (Sensitivity>=0.5, Specificity >=0.99)

FamiliesParameters
(Apo)-Serum amyloid A
Sensitivity Specificity Correlation Selectivity
(Pro)-Calcitonin
Sensitivity Specificity Correlation Selectivity
A-beta protein precursor
Sensitivity Specificity Correlation Selectivity
ABriPP/ADanPP
Sensitivity Specificity Correlation Selectivity
Alpha Synuclein
Sensitivity Specificity Correlation Selectivity
Apolipoprotein A I
Sensitivity Specificity Correlation Selectivity
Atrial natriuretic factor
Sensitivity Specificity Correlation Selectivity
Beta 2 Microglobulin
Sensitivity Specificity Correlation Selectivity
Cystatin C
Sensitivity Specificity Correlation Selectivity
Fibrinogen alpha
Sensitivity Specificity Correlation Selectivity
Gelsolin
Sensitivity Specificity Correlation Selectivity
Huntingtin
Sensitivity Specificity Correlation Selectivity
Insulin
Sensitivity Specificity Correlation Selectivity
Islet amyloid polypeptide
Sensitivity Specificity Correlation Selectivity
Lactadherin
Sensitivity Specificity Correlation Selectivity
Lactoferrin
Sensitivity Specificity Correlation Selectivity
Lung surfactant protein
Sensitivity Specificity Correlation Selectivity
Lysozyme
Sensitivity Specificity Correlation Selectivity
Prion Protein
Sensitivity Specificity Correlation Selectivity
Prolactin
Sensitivity Specificity Correlation Selectivity
Tau
Sensitivity Specificity Correlation Selectivity
Transthyretin
Sensitivity Specificity Correlation Selectivity

Protein Search

Click to search if a protein (Uniprot) is stored in AmypDB

Search if a protein, identified by Uniprot accession number, is stored in AmypDB
Example: 'P42858'

Uniprot accession number

File containing one accession number per line (Example file)
(filesize≤20M)

Pattern Search

Click to search if a pattern (PROSITE) is stored in AmypDB

Search if a pattern, identified by PROSITE accession number or in PROSITE format, is stored in AmypDB
Example: 'L-[DEGHKNPQRSTY]-x-L-[DEHKNQR]-C-[DEGHKNPQRSTY]-x(2)-[DEHKNPQY]'

Pattern in PROSITE format

File containing one pattern in PROSITE format per line (Example file)
(filesize≤20M)

PROSITE accession number